====== Virtual Seismological CEntOS 6 x86_64 Machine ======

===== install virtual box for you pc/laptop =====
download here [[https://www.virtualbox.org/wiki/Downloads|Oracle VirtualBox]]

===== install basic server system =====
follow [[howto_centos_server]]

  root/password => sismologia/sismologia
  user/password => sismologo/sismologo


===== install GuestAdditions =====
  
  yum update kernel*
  yum install gcc kernel-devel kernel-headers

add to /etc/profile the KERN_DIR environment variable
  
  export KERN_DIR=/usr/src/kernels/`uname -r`
  reboot

press ** HOST+D ** or VirtualMachine menu -> Devices -> Install Guest Addittions

  cd /media/VirtualBoxGuestAdditions
  ./VBoxLinuxAdditions.run
  reboot

done, your screen can be bigger...

===== install gfortran and f77 compatibility =====
  
  yum install gcc-gfortran compat-gcc-34-g77


===== install some python utilities =====
  
  yum install ipython scipy numpy python-matplotlib python-matplotlib-tk python-lxml python-setuptools
  # easy_install -U distribute


===== TauP =====  
Download [[http://www.seis.sc.edu/TauP/]] last release => [[http://www.seis.sc.edu/downloads/TauP/TauP-2.0.tgz]]

Extract file into install dir:

  # tar -xvzf TauP-2.0.tgz
  # mv TauP-2.0 /opt

Add your TauP to PATH in your /etc/profile:

  export TAUP_HOME=/opt/TauP-2.0
  export PATH=$PATH:$TAUP_HOME/bin

===== SeisGram2K =====  
Download [[http://alomax.free.fr/seisgram/ver60/java/SeisGram2K60.jar | SeisGram2K60.jar]] and 

[[http://alomax.free.fr/seisgram/ver60/download/sg2kdefaults | sg2kdefaults]]

see install instructions:
[[http://alomax.free.fr/seisgram/ver60/SeisGram2K_install.html]]

see also [[seisgram2k]]

if can download a previous version from [[ftp://trovador.iag.usp.br/tecnico/SeisGram2K53.pt-BR.jar]]

Extract file into install dir:

  # mkdir /opt/seisgram2k
  # mv _downloaded_file /opt/seisgram2k

Create a shortcut

  # touch /opt/seisgram2k/seisgram
  # chmod +x /opt/seisgram2k/seisgram
  # vim /opt/seisgram2k/seisgram
add this content:

  #!/bin/bash
  SG_HOME=/opt/seisgram2k
  JAR=$SG_HOME/SeisGram2K53.pt-BR.jar
  java -Xmx64m -classpath $JAR net.alomax.seisgram2k.SeisGram2K $*

Add it to PATH in your /etc/profile:

  export SEISGRAM_HOME=/opt/seisgram2k
  export PATH=$PATH:$SEISGRAM_HOME

===== SOD =====
download
  # wget http://www.seis.sc.edu/downloads/sod/3.0.0/sod-3.0.0.tgz

unpack 
  # tar -xvzf sod-3.0.0.tgz

add it to your path
  export SOD_HOME=/opt/sod-3.0.0
  export PATH=$PATH:$SOD_HOME/bin

more info: [[http://www.seis.sc.edu/sod/index.html | SOD]]

===== rdSeed =====  
Download [[http://www.iris.edu/pub/programs/rdseedv5.1.tar.gz]] 

  # tar -xvzf rdseedv5.1.tar.gz
  # cd rdseedv5.1
  # make 
  # mkdir /opt/local/bin
  # mv rdseed /opt/local/bin

Add it to PATH in your /etc/profile:

  export PATH=$PATH:/opt/local/bin

===== miniSEED tools =====
For each tool  
Download source from [[http://www.iris.edu/pub/programs/miniseed | IRIS]] 

  # tar -xvzf _file_
  # cd _dir_
  # make 
  # mv _binary_ /opt/local/bin

Add it to PATH in your /etc/profile:

  export PATH=$PATH:/opt/local/bin


===== PASSCAL software =====
download latest version
  # wget http://www.passcal.nmt.edu/ftp/software/passoft/linux/x86_64/PASSOFT-LATEST.x86_64.tar.bz2

unzip
  # bunzip2 PASSOFT-LATEST.x86_64.tar.bz2

untar
  # tar -xvf PASSOFT-LATEST.x86_64.tar

deploy
  # mv passcal /opt/passcal

add these lines to /etc/profile to setup your envoronment
  # passcal
  export PASSOFT=/opt/passcal
  export PASSCAL=/opt/passcal
  export PATH=${PATH}:${PASSCAL}/bin:${PASSCAL}/other/bin
  export MANPATH=${PASSCAL}/man:${MANPATH}


===== SAC =====
follow [[sac_101]]

===== PQL II =====
browse your version [[http://www.passcal.nmt.edu/ftp/software/pql/ | here]] or

download directly
  # wget http://www.passcal.nmt.edu/ftp/software/pql/linux/x86_64/PQL-2010-246.x86_64.rpm

install it
  # rpm -ivh PQL-2010-246.x86_64.rpm


===== SeisAn =====
see [[http://www.uib.no/rg/geodyn/artikler/2010/02/software | reference ]] 

browse software and manuals [[ftp://ftp.geo.uib.no/pub/seismo/SOFTWARE/SEISAN_9.0.1/ | here]]

make install dir
  # mkdir /opt/seisan-9.0.1; cd !$

download directly
  # wget ftp://ftp.geo.uib.no/pub/seismo/SOFTWARE/SEISAN_9.0.1/seisan_v9.0.1_linux_64bit.tar.gz

extract
  # tar -xvzf seisan_v9.0.1_linux_64bit.tar.gz

modify SEISAN_TOP directory in ** COM/SEISAN.bash **
  export SEISAN_TOP="/opt/seisan-9.0.1"

add it to /etc/profile
  export SEISAN_HOME="/opt/seisan-9.0.1"
  source ${SEISAN_HOME}/COM/SEISAN.bash

if you need compile other tools follow [[http://maxseismic.blogspot.com/2011/06/seisan-on-linux.html | Jim Tang]]


===== PDCC =====
download code
  # wget http://www.iris.edu/pub/programs/pdcc/pdcc-3.8.1.zip
  # unzip /pdcc-3.8.1.zip
  # mv PDCC-3.8 pdcc-3.8
  # mv pdcc-3.8 /opt

create shortcut
  # touch pdcc
  # chmod +x pdcc
  # vim pdcc

put there these lines
  #!/bin/bash
  OLD_DIR=`pwd`
  PDCC_HOME="/opt/pdcc-3.8"
  cd $PDCC_HOME
  java -Xmx256m -jar ./run_pdcc.jar
  cd $OLD_DIR

export to path in /etc/profile
  export PATH=$PATH:/opt/pdcc-3.8

===== RFNT Codes =====
raw reference [[http://eqseis.geosc.psu.edu/~cammon/HTML/RftnDocs/thecodes01.html | Charles Ammon ]]

download
  # wget http://eqseis.geosc.psu.edu/%7ecammon/Archives/RftnCodes.tar.gz

unpack
  # tar -xvzf RftnCodes.tar.gz

change sacio lib reference in ** build.it.csh **
  setenv SACLIB /opt/sac/lib/libsacio.a

ensure if you had gcc-g77 compatibility
  # yum install compat-gcc-34-g77

make
  # csh build.it.csh

add it to PATH in your /etc/profile
  export RFTN_HOME="/opt/Rftn.Codes"
  export PATH=$PATH:$RFTN_HOME/bin

===== GMT =====
ensure that you have epel repository installed (see [[ howto_centos_server ]]) and install
  # yum install GMT

caso necessite do gmtdefaults existe um exemplo para a versao 3 [[ftp://trovador.iag.usp.br/pub/gmtdefaults.txt
| aqui ]]
===== Hermann, Programs 3.30 =====
check if you have ncurses-devel:
  # yum install ncurses-devel

note: until now this is the only dependences that we didn't had.

download
  # wget http://www.eas.slu.edu/eqc/eqc_cps/Download/NP330.Feb-09-2012.tgz

unpack
  # tar -xvzf NP330.Feb-09-2012.tgz

put it were you want
  # mv PROGRAMS.330 /opt

run Setup to your arch
  # cd /opt/PROGRAMS.330
  # ./Setup LINUX64

make it (I've got 132 programs)
  # ./C

add it to your PATH
  export P330_HOME="/opt/PROGRAMS.330"
  export PATH=$P330_HOME/bin:$PATH

** please note ** that some program can be exist in more than one location, then check version of program that you're using e.g.

  * /opt/local/bin/rdseed (v5.1)
  * /opt/PROGRAMS.330/bin/rdseed (v5.0)

more [[http://www.eas.slu.edu/eqc/eqc_cps/Download/ | info]]

see also [[http://www.eas.slu.edu/eqc/eqc_cps/cpsbug.html | changeset]]

===== BRbFast =====
follow [[sod_/brbfast]]

===== focmec =====
  # wget ftp://trovador.iag.usp.br/pub/software/focmec.tar
  # tar -xvzf focmec.tar
  # cd __dir__/src

set fortran compiler on ** build_package ** file...

run it
  # ./build_package

share it on PATH
  export FM_HOME=/opt/local/focmec
  export PATH=$FM_HOME/bin:$PATH

===== SU - Seismic Unix =====
Pacotes para o Seismic Unix estão disponíveis para algumas distros. Para instalá-los, [[Seismic Unix|siga estas instruções]].

**Install it from source**

download and unpack
  # wget ftp://ftp.cwp.mines.edu/pub/cwpcodes/cwp_su_all_43R1.tgz
  # tar -xvzf cwp_su_all_43R1.tgz

set CWPROOT envvar
  # export CWPROOT=/opt/SU

choose your Makefile.config
  # mv $CWPROOT/src/configs/Makefile.config.ARCH $CWPROOT/src

make
  # make install
  # make finstall
  # make utils
  # make sfinstall

install motif development
  # yum install openmotif-devel mesa-libGL-devel mesa-libGLU-devel mesa-libGLw-devel freeglut-devel libXi-devel

make X app
  # make xtinstall
  # make xminstall
  # make mglinstall

more [[http://www.cwp.mines.edu/cwpcodes/ | info ]]

===== HYPO71 =====
download

  # make -f makefile
  # make -f makefile3
  # f77 -o wadati wadati.f

set you path


===== hypoDD =====
download & unpack
  # wget http://www.ldeo.columbia.edu/~felixw/HYPODD/HYPODD_1.3.tar.gz
  # tar -xvzf HYPODD_1.3.tar.gz

  # mv HYPODD /opt

  # cd src && make

set your path

===== obspy =====
follow [[howto_centos_server]]

===== some data converters =====
see  [[http://www.iris.edu/pub/programs/converters/]]